Research workbench
Molybdopterin biosynthesis moae protein from burkholderia ambifaria MC40-6
Analyse Molybdopterin biosynthesis moae protein from burkholderia ambifaria MC40-6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7L32
- Type
- protein
- Length
- 431 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mpt synthase subunit 2
- EC
- 2.8.1.12
- UniProt
- B1YRH1
- Ligands
- BR
- Pockets
- 4 · best druggability 0.54
Structure
x-ray diffraction · 3 distinct chains · 34% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mpt synthase subunit 2 (EC 2.8.1.12) | protein | 144 | 35% helix, 33% strand | B1YRH1 |
| B | Mpt synthase subunit 2 (EC 2.8.1.12) | protein | 147 | 33% helix, 33% strand | B1YRH1 |
| C | Mpt synthase subunit 2 (EC 2.8.1.12) | protein | 140 | 35% helix, 33% strand | B1YRH1 |
Ligands and binding sites
- BR · Bromide ion · ion · 8 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 220 | 0.54 | 0.77 | 25 | BR |
| 2 | 191 | 0.54 | 0.78 | 24 | BR |
| 3 | 66 | 0.40 | 0.79 | 14 | BR |
| 4 | 51 | 0.25 | 0.73 | 14 | empty |
Interfaces
2 interfaces between chains.
- B–C · 1472 Ų buried · 28 hydrogen bonds · protein-protein
- A–B · 305 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 7L32 · Molybdopterin biosynthesis MoaE protein from Burkholderia ambifaria MC40-6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1YRH1
- Elsewhere: RCSB PDB 7L32 · PDBe 7L32 · UniProt B1YRH1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.