Research workbench

Crystal structure of I107E cub myoglobin (I107E L29H F43H sperm whale myoglobin)

Analyse Crystal structure of I107E cub myoglobin (I107E L29H F43H sperm whale myoglobin) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7KYR
Type: protein
Length: 151 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Myoglobin
UniProt: P02185
Ligands: HEM, NA, SO4
Pockets: 1 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Myoglobin	protein	151	79% helix, 0% strand	P02185

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
NA · Sodium ion · metal · chains A
SO4 · Sulfate ion · ion · chains A
PG4 · Tetraethylene glycol · additive · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	188	0.71	0.88	29	HEM

Compared structures

7KYR · Crystal structure of I107E CuB myoglobin (I107E L29H F43H sperm whale myoglobin) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02185
Elsewhere: RCSB PDB 7KYR · PDBe 7KYR · UniProt P02185

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.