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Crystal structure of the marr family transcriptional regulator from bradyrhizobium japonicum

Analyse Crystal structure of the marr family transcriptional regulator from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7KYM
Type: protein
Length: 288 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Marr family transcriptional regulator
UniProt: A0A0A3XYM8
Ligands: PO4
Pockets: 2 · best druggability 0.45

Structure

x-ray diffraction · 2 distinct chains · 68% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Marr family transcriptional regulator	protein	144	67% helix, 7% strand	A0A0A3XYM8
B	Marr family transcriptional regulator	protein	144	68% helix, 8% strand	A0A0A3XYM8

Ligands and binding sites

PO4 · Phosphate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	197	0.45	0.73	25	empty
2	189	0.42	0.72	24	empty

Interfaces

1 interface between chains.

A–B · 491 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

7KYM · Crystal structure of the MarR family transcriptional regulator from Bradyrhizobium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0A3XYM8
Elsewhere: RCSB PDB 7KYM · PDBe 7KYM · UniProt A0A0A3XYM8

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