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1,N6-ethenoadnine (E) in dsdna sequence (5'-cgcgeattcgcg-3')

Analyse 1,N6-ethenoadnine (E) in dsdna sequence (5'-cgcgeattcgcg-3') in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7KWR
Type: DNA
Length: 24 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*(DCZ)P*GP*CP*GP*(EDA)P*AP*TP*TP*CP*GP*CP*G)-3')

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D((DCZ)PGPCPGP(EDA)PAPTPTPCPGPCPG)-3')	dna	12	—	—

Interfaces

1 interface between chains.

A–B · 666 Å² buried · 53 hydrogen bonds · nucleic-nucleic

Modifications

Observed in the structure: 4 modified (nucleotide modification).

Compared structures

7KWR · 1,N6-ethenoadnine (E) in dsDNA sequence (5'-CGCGEATTCGCG-3') · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7KWR · PDBe 7KWR

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