Research workbench
Surface glycan-binding protein B from bacteroides thetaiotaomicron
Analyse Surface glycan-binding protein B from bacteroides thetaiotaomicron in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7KWB
- Type
- protein
- Length
- 812 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Btsgbp-B
- UniProt
- A0A139L065
- Pockets
- 9 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 5% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Btsgbp-B | protein | 422 | 5% helix, 50% strand | A0A139L065 |
| B | Btsgbp-B | protein | 390 | 4% helix, 48% strand | A0A139L065 |
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 863 | 0.79 | 0.82 | 91 | empty |
| 2 | 210 | 0.62 | 0.82 | 28 | empty |
| 3 | 127 | 0.49 | 0.79 | 21 | empty |
| 4 | 128 | 0.49 | 0.79 | 21 | empty |
| 5 | 112 | 0.43 | 0.77 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 607 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 7KWB · Surface glycan-binding protein B from Bacteroides thetaiotaomicron · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A139L065
- Elsewhere: RCSB PDB 7KWB · PDBe 7KWB · UniProt A0A139L065
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