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NMR structure of a tRNA 2'-phosphotransferase from runella slithyformis in complex with NAD+

Analyse NMR structure of a tRNA 2'-phosphotransferase from runella slithyformis in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7KW9
Type: protein
Length: 178 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TRNA 2'-phosphotransferase
EC: 2.7.1.160
Ligands: NAD
Pockets: 1 · best druggability 0.36

Structure

solution nmr · 1 distinct chain · 35% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TRNA 2'-phosphotransferase (EC 2.7.1.160)	protein	178	35% helix, 17% strand	—

Ligands and binding sites

NAD · Nicotinamide-adenine-dinucleotide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	109	0.36	0.74	23	NAD

Compared structures

7KW9 · NMR Structure of a tRNA 2'-phosphotransferase from Runella slithyformis in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7KW9 · PDBe 7KW9

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