Research workbench
1.70 a resolution crystal structure of group a streptococcus hupz-V5- HIS6
Analyse 1.70 a resolution crystal structure of group a streptococcus hupz-V5- HIS6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7KPZ
- Type
- protein
- Length
- 251 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hupz
- EC
- 1.4.3.5
- Pockets
- 3 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 22% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hupz (EC 1.4.3.5) | protein | 125 | 22% helix, 43% strand | — |
| B | Hupz (EC 1.4.3.5) | protein | 126 | 21% helix, 42% strand | — |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 92 | 0.65 | 0.90 | 19 | empty |
| 2 | 353 | 0.59 | 0.77 | 36 | empty |
| 3 | 255 | 0.55 | 0.77 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 1190 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 7KPZ · 1.70 A resolution crystal structure of Group A Streptococcus HupZ-V5-His6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7KPZ · PDBe 7KPZ
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