Research workbench
Adeno-associated virus serotype 5 at 2.1 ångströms resolution, AAV5
Analyse Adeno-associated virus serotype 5 at 2.1 ångströms resolution, AAV5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7KP3
- Type
- protein
- Length
- 516 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein
- UniProt
- Q9YIJ1
- Pockets
- 5 · best druggability 0.73
Structure
electron microscopy · 1 distinct chain · 7% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein | protein | 516 | 7% helix, 34% strand | Q9YIJ1 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 975 | 0.73 | 0.76 | 114 | empty |
| 2 | 234 | 0.49 | 0.75 | 32 | empty |
| 3 | 156 | 0.49 | 0.78 | 28 | empty |
| 4 | 53 | 0.35 | 0.79 | 18 | empty |
| 5 | 58 | 0.30 | 0.75 | 14 | empty |
Compared structures
- 7KP3 · Adeno-associated virus serotype 5 at 2.1 Angstroms resolution, AAV5 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9YIJ1
- Elsewhere: RCSB PDB 7KP3 · PDBe 7KP3 · UniProt Q9YIJ1
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