Research workbench
Wheat dwarf virus rep domain circular permutation complexed with a single-stranded DNA 10-mer comprising the cleavage site and MN2+
Analyse Wheat dwarf virus rep domain circular permutation complexed with a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7KIK
- Type
- protein + DNA
- Length
- 130 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Replication-associated protein; DNA (5'-D(*TP*AP*AP*TP*AP*TP*TP*AP*CP*C)-3')
- EC
- 3.1.21.-
- UniProt
- A0A0F6N442
- Ligands
- MN
Structure
x-ray diffraction · 2 distinct chains · 21% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Replication-associated protein (EC 3.1.21.-) | protein | 121 | 21% helix, 40% strand | A0A0F6N442 |
| C | DNA (5'-D(*TP*AP*AP*TP*AP*TP*TP*AP*CP*C)-3') | dna | 9 | — | — |
Ligands and binding sites
- MN · Manganese (II) ion · metal · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–C · 912 Ų buried · 22 hydrogen bonds · protein-nucleic
Compared structures
- 7KIK · Wheat dwarf virus Rep domain circular permutation complexed with a single-stranded DNA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F6N442
- Elsewhere: RCSB PDB 7KIK · PDBe 7KIK · UniProt A0A0F6N442
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