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Structure of an HXLR/DUF24 family transcription regulator, CDTR_3200 from hypervirulent clostridioides difficile R20291

Analyse Structure of an HXLR/DUF24 family transcription regulator, CDTR_3200 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7KD3
Type: protein
Length: 197 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative transcriptional regulator
UniProt: C9YRI3
Pockets: 1 · best druggability 0.57

Structure

x-ray diffraction · 2 distinct chains · 58% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative transcriptional regulator	protein	101	55% helix, 14% strand	C9YRI3
B	Putative transcriptional regulator	protein	96	61% helix, 6% strand	C9YRI3

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	276	0.57	0.77	35	empty

Interfaces

1 interface between chains.

A–B · 1440 Å² buried · 11 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (oxidation).

Compared structures

7KD3 · Structure of an HxlR/DUF24 family transcription regulator, CdTR_3200 from hypervirulent… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C9YRI3
Elsewhere: RCSB PDB 7KD3 · PDBe 7KD3 · UniProt C9YRI3

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