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Cryo-EM structure of heterologous protein complex loaded thermotoga maritima encapsulin capsid

Analyse Cryo-EM structure of heterologous protein complex loaded thermotoga maritima… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7K5W
Type: protein
Length: 264 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Maritimacin
EC: 3.4.-.-
UniProt: Q9WZP2
Pockets: 2 · best druggability 0.55

Structure

electron microscopy · 1 distinct chain · 33% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Maritimacin (EC 3.4.-.-)	protein	264	33% helix, 30% strand	Q9WZP2

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	64	0.55	0.88	16	empty
2	57	0.29	0.75	13	empty

Compared structures

7K5W · Cryo-EM structure of heterologous protein complex loaded Thermotoga maritima encapsulin… · the same entry in another collection · chain A against A, TM-score 1.00
Q9WZP2 · AlphaFold monomer V2.0 prediction for maritimacin (Q9WZP2) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9WZP2
Elsewhere: RCSB PDB 7K5W · PDBe 7K5W · UniProt Q9WZP2

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