Research workbench
Ebola virus VP40 octameric ring generated by an RNA oligonucleotide
Analyse Ebola virus VP40 octameric ring generated by an RNA oligonucleotide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7K5L
- Type
- protein + RNA
- Length
- 127 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Matrix protein VP40; HSP RNA oligonucleotide
- UniProt
- Q05128
Structure
x-ray diffraction · 2 distinct chains · 15% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Matrix protein VP40 | protein | 124 | 15% helix, 48% strand | Q05128 |
| R | HSP RNA oligonucleotide | rna | 3 | — | — |
Interfaces
1 interface between chains.
- A–R · 242 Ų buried · 6 hydrogen bonds · protein-nucleic
Compared structures
- 7K5L · Ebola virus VP40 octameric ring generated by an RNA oligonucleotide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05128
- Elsewhere: RCSB PDB 7K5L · PDBe 7K5L · UniProt Q05128
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