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Crystal structure of the beta lactamase class D from chitinophaga pinensis by serial crystallography
Analyse Crystal structure of the beta lactamase class D from chitinophaga pinensis by… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7K3M
- Type
- protein
- Length
- 245 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-lactamase
- EC
- 3.5.2.6
- UniProt
- C7PL61
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-lactamase (EC 3.5.2.6) | protein | 245 | 39% helix, 24% strand | C7PL61 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 176 | 0.47 | 0.75 | 21 | empty |
Modifications
Observed in the structure: 13 modified (engineered, carboxylation).
Compared structures
- 7K3M · Crystal Structure of the Beta Lactamase Class D from Chitinophaga pinensis by Serial… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C7PL61
- Elsewhere: RCSB PDB 7K3M · PDBe 7K3M · UniProt C7PL61
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