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Crystal structure of pisum sativum KAI2 in complex with GR24-ENT5DS product

Analyse Crystal structure of pisum sativum KAI2 in complex with GR24-ENT5DS product in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7K38
Type: protein
Length: 270 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: PSKAI2B protein
Ligands: VTY
Pockets: 1 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	PSKAI2B protein	protein	270	48% helix, 18% strand	—

Ligands and binding sites

VTY · (5S)-5-hydroxy-3-methylfuran-2(5H)-one · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	93	0.63	0.88	20	VTY

Compared structures

7K38 · Crystal structure of Pisum sativum KAI2 in complex with GR24-ent5DS product · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7K38 · PDBe 7K38

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