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Crystal structure of srtb-anchored collagen-binding adhesin fragment (residues 206-565) from clostridioides difficile strain 630

Analyse Crystal structure of srtb-anchored collagen-binding adhesin fragment (residues… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7K1U
Type: protein
Length: 253 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Collagen-binding adhesin
UniProt: Q18DC3
Pockets: 1 · best druggability 0.28

Structure

x-ray diffraction · 1 distinct chain · 2% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Collagen-binding adhesin	protein	253	2% helix, 50% strand	Q18DC3

Ligands and binding sites

BTB · 2-[bis-(2-hydroxy-ethyl)-amino]-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.28	0.75	15	empty

Modifications

Observed in the structure: 3 modified, 1 isopeptide (engineered, isopeptide).

Compared structures

7K1U · Crystal Structure of SrtB-anchored Collagen-binding Adhesin Fragment (residues 206-565)… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q18DC3
Elsewhere: RCSB PDB 7K1U · PDBe 7K1U · UniProt Q18DC3

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