Research workbench

Bacteriophage mu transposase core domain with 2 monomers per asymmetric unit

Analyse Bacteriophage mu transposase core domain with 2 monomers per asymmetric unit in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1BCM
Type: protein
Length: 607 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bacteriophage mu transposase
UniProt: P07636
Pockets: 12 · best druggability 0.72

Structure

x-ray diffraction · 2 distinct chains · 26% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Bacteriophage mu transposase	protein	304	24% helix, 26% strand	P07636
B	Bacteriophage mu transposase	protein	303	27% helix, 27% strand	P07636

Pockets

12 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	561	0.72	0.80	48	empty
2	110	0.65	0.89	23	empty
3	104	0.59	0.86	18	empty
4	208	0.59	0.80	27	empty
5	73	0.43	0.81	18	empty

Interfaces

1 interface between chains.

A–B · 1008 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

1BCM · Bacteriophage mu transposase core domain with 2 monomers per asymmetric unit · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P07636
Elsewhere: RCSB PDB 1BCM · PDBe 1BCM · UniProt P07636

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.