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Tamana bat virus XRRNA1

Analyse Tamana bat virus XRRNA1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7K16
Type: RNA
Length: 51 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (51-mer)
Ligands: MG, NA
Pockets: 2 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
P	RNA (51-mer)	rna	51	—	—

Ligands and binding sites

MG · Magnesium ion · metal · 5 copies · chains P
NA · Sodium ion · metal · chains P

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	228	0.49	0.76	23	MG
2	108	0.42	0.78	13	NA

Modifications

Observed in the structure: 1 modified (nucleotide modification).

Compared structures

7K16 · Tamana Bat Virus xrRNA1 · the same entry in another collection · chain P against P, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7K16 · PDBe 7K16

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