Research workbench
Osmoporin ompc from E.COLI K12
Analyse Osmoporin ompc from E.COLI K12 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7JZ3
- Type
- protein
- Length
- 1,038 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer membrane protein C
- UniProt
- C6K7N1
- Pockets
- 12 · best druggability 0.79
Structure
electron microscopy · 1 distinct chain · 5% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, C, A | Outer membrane protein C | protein | 346 | 5% helix, 57% strand | C6K7N1 |
Pockets
12 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 87 | 0.79 | 0.99 | 22 | empty |
| 2 | 62 | 0.73 | 0.98 | 13 | empty |
| 3 | 820 | 0.72 | 0.78 | 64 | empty |
| 4 | 1157 | 0.72 | 0.76 | 75 | empty |
| 5 | 1197 | 0.71 | 0.75 | 74 | empty |
Interfaces
3 interfaces between chains.
- B–C · 1644 Ų buried · 26 hydrogen bonds · protein-protein
- C–A · 1640 Ų buried · 25 hydrogen bonds · protein-protein
- B–A · 1634 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 7JZ3 · Osmoporin OmpC from E.coli K12 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C6K7N1
- Elsewhere: RCSB PDB 7JZ3 · PDBe 7JZ3 · UniProt C6K7N1
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