Research workbench
Subparticle MAP of zikv mr-766
Analyse Subparticle MAP of zikv mr-766 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7JYI
- Type
- protein
- Length
- 1,152 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- E glycoprotein; M protein
- UniProt
- A0A140D2T1, C8XPB1
- Pockets
- 14 · best druggability 0.86
Structure
electron microscopy · 2 distinct chains · 23% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, E | E glycoprotein | protein | 501 | 17% helix, 36% strand | A0A140D2T1 |
| D, F | M protein | protein | 75 | 59% helix, 0% strand | C8XPB1 |
Pockets
14 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 630 | 0.86 | 0.91 | 63 | empty |
| 2 | 584 | 0.73 | 0.81 | 51 | empty |
| 3 | 708 | 0.71 | 0.78 | 67 | empty |
| 4 | 749 | 0.70 | 0.77 | 64 | empty |
| 5 | 521 | 0.70 | 0.80 | 42 | empty |
Interfaces
6 interfaces between chains.
- E–F · 1737 Ų buried · 11 hydrogen bonds · protein-protein
- C–D · 1714 Ų buried · 10 hydrogen bonds · protein-protein
- C–E · 1578 Ų buried · 6 hydrogen bonds · protein-protein
- D–F · 1421 Ų buried · 11 hydrogen bonds · protein-protein
- D–E · 1141 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 7JYI · Subparticle Map of ZIKV MR-766 · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A140D2T1
- Every structure of UniProt C8XPB1
- Elsewhere: RCSB PDB 7JYI · PDBe 7JYI · UniProt A0A140D2T1 · UniProt C8XPB1
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