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Crystal structures of artificially designed homomeric RNA nanoarchitectures

Analyse Crystal structures of artificially designed homomeric RNA nanoarchitectures in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7JRR
Type: RNA
Length: 51 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (50-mer)
Ligands: MN, MG
Pockets: 2 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (50-mer)	rna	51	—	—

Ligands and binding sites

MN · Manganese (II) ion · metal · 6 copies · chains A
MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	557	0.58	0.73	32	MN
2	81	0.28	0.72	10	empty

Modifications

Observed in the structure: 1 modified (nucleotide modification).

Compared structures

7JRR · Crystal structures of artificially designed homomeric RNA nanoarchitectures · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7JRR · PDBe 7JRR

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