Research workbench
Adeno-associated virus strain AAV7 capsid icosahedral structure
Analyse Adeno-associated virus strain AAV7 capsid icosahedral structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7JOT
- Type
- protein
- Length
- 518 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein
- UniProt
- Q8JQG0
- Pockets
- 9 · best druggability 0.59
Structure
electron microscopy · 1 distinct chain · 4% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein | protein | 518 | 4% helix, 34% strand | Q8JQG0 |
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 342 | 0.59 | 0.77 | 38 | empty |
| 2 | 124 | 0.53 | 0.81 | 22 | empty |
| 3 | 101 | 0.44 | 0.78 | 21 | empty |
| 4 | 129 | 0.43 | 0.76 | 29 | empty |
| 5 | 98 | 0.41 | 0.77 | 18 | empty |
Compared structures
- 7JOT · Adeno-associated virus strain AAV7 capsid icosahedral structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8JQG0
- Elsewhere: RCSB PDB 7JOT · PDBe 7JOT · UniProt Q8JQG0
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