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Crystal structure of ZN(II)-bound zint-like domain of streptococcus pneumoniae adca

Analyse Crystal structure of ZN(II)-bound zint-like domain of streptococcus pneumoniae… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7JJB
Type: protein
Length: 180 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Zinc-binding lipoprotein adca
UniProt: Q8CWN2
Ligands: NA, ZN, MG
Pockets: 1 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Zinc-binding lipoprotein adca	protein	180	30% helix, 32% strand	Q8CWN2

Ligands and binding sites

NA · Sodium ion · metal · 6 copies · chains A
ZN · Zinc ion · metal · 2 copies · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	520	0.65	0.76	46	ZN

Compared structures

7JJB · Crystal structure of Zn(II)-bound ZinT-like domain of Streptococcus pneumoniae AdcA · the same entry in another collection · chain A against A, TM-score 1.00
Q8CWN2 · AlphaFold monomer V2.0 prediction for zinc-binding lipoprotein adca (Q8CWN2) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8CWN2
Elsewhere: RCSB PDB 7JJB · PDBe 7JJB · UniProt Q8CWN2

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