Research workbench

Intramolecular triplex, NMR, 10 structures

Analyse Intramolecular triplex, NMR, 10 structures in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1BCE
Type: DNA
Length: 18 nucleotides
Chains: 3
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*AP*AP*GP*GP*AP*A)-3'); DNA (5'-D(*TP*TP*CP*CP*TP*T)-3')

Structure

solution nmr · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA (5'-D(APAPGPGPAPA)-3')	dna	6	—	—
B, C	DNA (5'-D(TPTPCPCPTPT)-3')	dna	6	—	—

Interfaces

3 interfaces between chains.

A–C · 390 Å² buried · 26 hydrogen bonds · nucleic-nucleic
A–B · 262 Å² buried · 30 hydrogen bonds · nucleic-nucleic
B–C · 104 Å² buried · 0 hydrogen bonds · nucleic-nucleic

Compared structures

1BCE · Intramolecular triplex, NMR, 10 structures · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1BCE · PDBe 1BCE

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.