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Crystal structure of the complex formed by wolbachia cytoplasmic incompatibility factors cida and CIDBND1-ND2 from WPIP(TUNIS)

Analyse Crystal structure of the complex formed by wolbachia cytoplasmic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7FIV
Type: protein
Length: 1,149 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: CIDA_I GAMMA/2 protein; CIDB_I B/2 protein
UniProt: A0A2K9VS01, A0A2K9VS18
Pockets: 12 · best druggability 0.88

Structure

x-ray diffraction · 2 distinct chains · 45% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	CIDA_I GAMMA/2 protein	protein	408	66% helix, 3% strand	A0A2K9VS01
B	CIDB_I B/2 protein	protein	741	33% helix, 25% strand	A0A2K9VS18

Pockets

12 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1138	0.88	0.89	140	empty
2	286	0.78	0.90	41	empty
3	114	0.59	0.86	25	empty
4	138	0.51	0.80	22	empty
5	71	0.47	0.83	17	empty

Interfaces

1 interface between chains.

A–B · 2727 Å² buried · 48 hydrogen bonds · protein-protein

Compared structures

7FIV · Crystal structure of the complex formed by Wolbachia cytoplasmic incompatibility factors… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2K9VS01
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Elsewhere: RCSB PDB 7FIV · PDBe 7FIV · UniProt A0A2K9VS01 · UniProt A0A2K9VS18

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