Research workbench
Cryo-EM structure of the hedgehog release protein disp from water bear (hypsibius dujardini)
Analyse Cryo-EM structure of the hedgehog release protein disp from water bear… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7FIF
- Type
- protein
- Length
- 805 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein dispatched-like protein 1
- UniProt
- A0A1W0WWK2
- Pockets
- 8 · best druggability 0.87
Structure
electron microscopy · 1 distinct chain · 66% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein dispatched-like protein 1 | protein | 805 | 66% helix, 2% strand | A0A1W0WWK2 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1140 | 0.87 | 0.88 | 202 | empty |
| 2 | 1063 | 0.81 | 0.82 | 126 | empty |
| 3 | 149 | 0.68 | 0.88 | 35 | empty |
| 4 | 119 | 0.60 | 0.86 | 29 | empty |
| 5 | 94 | 0.49 | 0.82 | 28 | empty |
Compared structures
- 7FIF · Cryo-EM structure of the hedgehog release protein Disp from water bear (Hypsibius… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1W0WWK2
- Elsewhere: RCSB PDB 7FIF · PDBe 7FIF · UniProt A0A1W0WWK2
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