Research workbench
Crystal structure of multi-functional polysaccharide lyase SMLT1473- H168A from stenotrophomonas maltophilia (strain K279A) at pH-5.0
Analyse Crystal structure of multi-functional polysaccharide lyase SMLT1473- H168A from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7FI2
- Type
- protein
- Length
- 308 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polysaccharide lyase
- EC
- 4.2.2.-
- UniProt
- B2FHL8
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 66% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polysaccharide lyase (EC 4.2.2.-) | protein | 308 | 66% helix, 3% strand | B2FHL8 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 415 | 0.60 | 0.75 | 52 | empty |
| 2 | 60 | 0.31 | 0.76 | 13 | PEG |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7FI2 · Crystal structure of Multi-functional Polysaccharide lyase Smlt1473-H168A from… · the same entry in another collection · chain A against A, TM-score 1.00
- B2FHL8 · AlphaFold monomer V2.0 prediction for polysaccharide lyase (B2FHL8) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2FHL8
- Elsewhere: RCSB PDB 7FI2 · PDBe 7FI2 · UniProt B2FHL8
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