Research workbench
Crystal structure of pirb insecticidal protein from photorhabdus akhurstii
Analyse Crystal structure of pirb insecticidal protein from photorhabdus akhurstii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7FDP
- Type
- protein
- Length
- 805 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Insecticidal protein
- UniProt
- G5DBH4
- Pockets
- 2 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Insecticidal protein | protein | 402 | 47% helix, 20% strand | G5DBH4 |
| B | Insecticidal protein | protein | 403 | 47% helix, 20% strand | G5DBH4 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 845 | 0.81 | 0.84 | 100 | empty |
| 2 | 51 | 0.68 | 0.97 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 1127 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 7FDP · Crystal structure of PirB insecticidal protein from Photorhabdus akhurstii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G5DBH4
- Elsewhere: RCSB PDB 7FDP · PDBe 7FDP · UniProt G5DBH4
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