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Engineered hepatitis B virus core antigen with short linker T=4

Analyse Engineered hepatitis B virus core antigen with short linker T=4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7FDJ
Type: protein
Length: 548 residues
Chains: 4
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsid PROTEIN,IMMUNOGLOBULIN G-binding protein a
UniProt: P69706
Pockets: 7 · best druggability 0.81

Structure

electron microscopy · 1 distinct chain · 65% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, D, C	Capsid PROTEIN,IMMUNOGLOBULIN G-binding protein a	protein	137	65% helix, 0% strand	P69706

Pockets

7 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	767	0.81	0.84	96	empty
2	510	0.80	0.86	57	empty
3	292	0.72	0.85	41	empty
4	301	0.67	0.82	45	empty
5	314	0.66	0.81	33	empty

Interfaces

3 interfaces between chains.

A–B · 1814 Å² buried · 12 hydrogen bonds · protein-protein
D–C · 1788 Å² buried · 16 hydrogen bonds · protein-protein
B–C · 615 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

7FDJ · Engineered Hepatitis B virus core antigen with short linker T=4 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P69706
Elsewhere: RCSB PDB 7FDJ · PDBe 7FDJ · UniProt P69706

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