Research workbench
Crystal structure of CMABCB1 in lipidic mesophase revealed by lcp-sfx
Analyse Crystal structure of CMABCB1 in lipidic mesophase revealed by lcp-sfx in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7FC9
- Type
- protein
- Length
- 584 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable ATP-dependent transporter YCF16
- UniProt
- M1VAN7
- Ligands
- ANP, ZN, MG, CL
- Pockets
- 5 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 63% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable ATP-dependent transporter YCF16 | protein | 584 | 63% helix, 10% strand | M1VAN7 |
Ligands and binding sites
- ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · chains A
- ZN · Zinc ion · metal · 9 copies · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 147 | 0.68 | 0.89 | 25 | empty |
| 2 | 244 | 0.63 | 0.81 | 34 | empty |
| 3 | 389 | 0.59 | 0.75 | 45 | ACT |
| 4 | 127 | 0.47 | 0.77 | 17 | empty |
| 5 | 120 | 0.46 | 0.78 | 24 | ZN |
Compared structures
- 7FC9 · Crystal structure of CmABCB1 in lipidic mesophase revealed by LCP-SFX · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M1VAN7
- Elsewhere: RCSB PDB 7FC9 · PDBe 7FC9 · UniProt M1VAN7
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