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Room temperature structure of bacterial copper amine oxidase determined by serial femtosecond crystallography

Analyse Room temperature structure of bacterial copper amine oxidase determined by… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7F8K
Type: protein
Length: 620 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phenylethylamine oxidase
EC: 1.4.3.21
UniProt: P46881
Ligands: CU
Pockets: 7 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phenylethylamine oxidase (EC 1.4.3.21)	protein	620	13% helix, 42% strand	P46881

Ligands and binding sites

CU · Copper (II) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	60	0.65	0.94	26	empty
2	276	0.63	0.81	44	empty
3	199	0.51	0.77	32	empty
4	56	0.51	0.87	16	empty
5	76	0.44	0.81	18	empty

Modifications

Observed in the structure: 1 disulfide, 1 modified (disulfide, nonstandard).

Compared structures

7F8K · Room temperature structure of bacterial copper amine oxidase determined by serial… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P46881
Elsewhere: RCSB PDB 7F8K · PDBe 7F8K · UniProt P46881

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