Research workbench
Structure of the bacterial cellulose synthase subunit Z from enterobacter sp. cjf-002
Analyse Structure of the bacterial cellulose synthase subunit Z from enterobacter sp.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7F81
- Type
- protein
- Length
- 1,352 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucanase
- EC
- 3.2.1.-
- UniProt
- K0IUV6
- Ligands
- SRT
- Pockets
- 8 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Glucanase (EC 3.2.1.-) | protein | 338 | 47% helix, 15% strand | K0IUV6 |
Ligands and binding sites
- SRT · S,R meso-tartaric acid · ligand · 2 copies · chains B, D
- GOL · Glycerol · additive · 21 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 555 | 0.65 | 0.76 | 71 | GOL |
| 2 | 179 | 0.60 | 0.83 | 32 | GOL |
| 3 | 424 | 0.55 | 0.73 | 55 | empty |
| 4 | 241 | 0.51 | 0.75 | 31 | GOL |
| 5 | 173 | 0.46 | 0.75 | 29 | GOL |
Interfaces
4 interfaces between chains.
- B–D · 373 Ų buried · 4 hydrogen bonds · protein-protein
- C–D · 337 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 327 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 110 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 7F81 · Structure of the bacterial cellulose synthase subunit Z from Enterobacter sp. CJF-002 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K0IUV6
- Elsewhere: RCSB PDB 7F81 · PDBe 7F81 · UniProt K0IUV6
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