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Crystal structure of non-specific class-C acid phosphatase from sphingobium sp. rsms bound to adenine at pH 9
Analyse Crystal structure of non-specific class-C acid phosphatase from sphingobium sp.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7F7A
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Acid phosphatase
- UniProt
- A0A197BYF0
- Ligands
- ADE, MG
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Acid phosphatase | protein | 254 | 43% helix, 17% strand | A0A197BYF0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 253 | 0.53 | 0.76 | 32 | ADE, MG |
| 2 | 223 | 0.49 | 0.75 | 24 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7F7A · Crystal structure of Non-specific class-C acid phosphatase from Sphingobium sp. RSMS… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A197BYF0
- Elsewhere: RCSB PDB 7F7A · PDBe 7F7A · UniProt A0A197BYF0
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