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Conserved and divergent strigolactone signaling in saccharum spontaneum

Analyse Conserved and divergent strigolactone signaling in saccharum spontaneum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7F5W
Type: protein
Length: 537 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: High tillering and dwarf 2 protein
UniProt: A0A0D5NT23
Pockets: 5 · best druggability 0.70

Structure

x-ray diffraction · 2 distinct chains · 48% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	High tillering and dwarf 2 protein	protein	269	48% helix, 16% strand	A0A0D5NT23
B	High tillering and dwarf 2 protein	protein	268	49% helix, 16% strand	A0A0D5NT23

Pockets

5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	156	0.70	0.88	21	empty
2	125	0.66	0.87	18	empty
3	223	0.55	0.78	30	empty
4	204	0.52	0.77	31	empty
5	92	0.37	0.76	15	empty

Interfaces

1 interface between chains.

A–B · 606 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

7F5W · Conserved and divergent strigolactone signaling in Saccharum spontaneum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0D5NT23
Elsewhere: RCSB PDB 7F5W · PDBe 7F5W · UniProt A0A0D5NT23

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