Research workbench
X-ray crystal structure of Y149A mutated HSP72-nbd in complex with ADP
Analyse X-ray crystal structure of Y149A mutated HSP72-nbd in complex with ADP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7F4Z
- Type
- protein
- Length
- 378 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Heat shock 70 kda protein 1B
- UniProt
- P0DMV9
- Ligands
- ADP, MG, K, CL, PO4
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Heat shock 70 kda protein 1B | protein | 378 | 41% helix, 29% strand | P0DMV9 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- MG · Magnesium ion · metal · chains A
- K · Potassium ion · metal · chains A
- CL · Chloride ion · ion · chains A
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 873 | 0.78 | 0.81 | 91 | ADP, MG, K, PO4 |
Compared structures
- 7F4Z · X-ray crystal structure of Y149A mutated Hsp72-NBD in complex with ADP · the same entry in another collection · chain A against A, TM-score 1.00
- P0DMV9 · AlphaFold monomer V2.0 prediction for heat shock 70 kda protein 1B (P0DMV9) · a predicted model of the same protein · chain A against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DMV9
- Elsewhere: RCSB PDB 7F4Z · PDBe 7F4Z · UniProt P0DMV9
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