Research workbench
Joint neutron and X-ray crystal structure of the nucleotide-binding domain of HSP72 in complex with ADP
Analyse Joint neutron and X-ray crystal structure of the nucleotide-binding domain of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7F4X
- Type
- protein
- Length
- 378 residues
- Chains
- 1
- Method
- x-ray diffraction; neutron diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Heat shock 70 kda protein 1B
- UniProt
- P0DMV9
- Ligands
- ADP, MG, NA
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction; neutron diffraction · 1 distinct chain · 41% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Heat shock 70 kda protein 1B | protein | 378 | 41% helix, 29% strand | P0DMV9 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- MG · Magnesium ion · metal · chains A
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 696 | 0.77 | 0.82 | 77 | ADP, MG, NA |
Compared structures
- 7F4X · Joint neutron and X-ray crystal structure of the nucleotide-binding domain of Hsp72 in… · the same entry in another collection · chain A against A, TM-score 1.00
- P0DMV9 · AlphaFold monomer V2.0 prediction for heat shock 70 kda protein 1B (P0DMV9) · a predicted model of the same protein · chain A against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DMV9
- Elsewhere: RCSB PDB 7F4X · PDBe 7F4X · UniProt P0DMV9
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