Research workbench
Structure of POPP2 in apo form
Analyse Structure of POPP2 in apo form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7F3N
- Type
- protein
- Length
- 247 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type III effector protein POPP2
- UniProt
- Q8Y125
- Pockets
- 4 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 57% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type III effector protein POPP2 | protein | 247 | 57% helix, 15% strand | Q8Y125 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 93 | 0.43 | 0.79 | 15 | empty |
| 2 | 125 | 0.42 | 0.76 | 19 | empty |
| 3 | 82 | 0.34 | 0.74 | 17 | empty |
| 4 | 58 | 0.32 | 0.75 | 15 | empty |
Compared structures
- 7F3N · Structure of PopP2 in apo form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8Y125
- Elsewhere: RCSB PDB 7F3N · PDBe 7F3N · UniProt Q8Y125
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