Research workbench
Cyanophage a-1(L) capsid asymmetric unit
Analyse Cyanophage a-1(L) capsid asymmetric unit in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7F38
- Type
- protein
- Length
- 3,257 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative major capsid protein
- UniProt
- A0A191SAV5
- Pockets
- 20 · best druggability 0.64
Structure
electron microscopy · 2 distinct chains · 20% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H | Putative major capsid protein | protein | 363 | 20% helix, 21% strand | A0A191SAV5 |
| I | Putative major capsid protein | protein | 353 | 20% helix, 21% strand | A0A191SAV5 |
Pockets
20 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 54 | 0.64 | 0.94 | 17 | empty |
| 2 | 178 | 0.61 | 0.83 | 41 | empty |
| 3 | 145 | 0.55 | 0.82 | 36 | empty |
| 4 | 140 | 0.55 | 0.81 | 27 | empty |
| 5 | 169 | 0.53 | 0.79 | 26 | empty |
Interfaces
20 interfaces between chains.
- G–H · 3405 Ų buried · 76 hydrogen bonds · protein-protein
- C–H · 3372 Ų buried · 88 hydrogen bonds · protein-protein
- D–E · 3371 Ų buried · 82 hydrogen bonds · protein-protein
- A–B · 3344 Ų buried · 72 hydrogen bonds · protein-protein
- E–F · 3343 Ų buried · 81 hydrogen bonds · protein-protein
Compared structures
- 7F38 · Cyanophage A-1(L) capsid asymmetric unit · the same entry in another collection · chain G against G, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A191SAV5
- Elsewhere: RCSB PDB 7F38 · PDBe 7F38 · UniProt A0A191SAV5
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