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Crystal structure of the sensor domain of vbrk from vibrio rotiferianus (crystal type 2)
Analyse Crystal structure of the sensor domain of vbrk from vibrio rotiferianus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7F2H
- Type
- protein
- Length
- 420 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Histidine kinase
- UniProt
- A0A2K7STF1
- Pockets
- 2 · best druggability 0.34
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Histidine kinase | protein | 217 | 48% helix, 16% strand | A0A2K7STF1 |
| B | Histidine kinase | protein | 203 | 46% helix, 15% strand | A0A2K7STF1 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.34 | 0.76 | 14 | empty |
| 2 | 61 | 0.31 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 49 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 7F2H · Crystal structure of the sensor domain of VbrK from Vibrio rotiferianus (crystal type 2) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2K7STF1
- Elsewhere: RCSB PDB 7F2H · PDBe 7F2H · UniProt A0A2K7STF1
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