Research workbench
Arabidopsis thaliana protease-associated domain of vacuolar-sorting receptor 1 in complex with cruciferin 1 C-terminal pentapeptide rvaaa (PH9)
Analyse Arabidopsis thaliana protease-associated domain of vacuolar-sorting receptor 1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7F2D
- Type
- protein
- Length
- 148 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vacuolar-sorting receptor 1; Cruciferin 1 C-terminal peptide
- UniProt
- P93026, P15455
Structure
x-ray diffraction · 2 distinct chains · 19% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vacuolar-sorting receptor 1 | protein | 143 | 20% helix, 31% strand | P93026 |
| B | Cruciferin 1 C-terminal peptide | protein | 5 | 0% helix, 40% strand | P15455 |
Interfaces
1 interface between chains.
- A–B · 308 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7F2D · Arabidopsis thaliana protease-associated domain of vacuolar-sorting receptor 1 in complex… · the same entry in another collection · chain A against A, TM-score 1.00
- P93026 · AlphaFold monomer V2.0 prediction for vacuolar-sorting receptor 1 (P93026) · a predicted model of the same protein · chain A against A, TM-score 0.98
- P15455 · AlphaFold monomer V2.0 prediction for 12S seed storage protein CRA1 (P15455) · a predicted model of the same protein · chain B against A, TM-score 0.61
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P93026
- Every structure of UniProt P15455
- Elsewhere: RCSB PDB 7F2D · PDBe 7F2D · UniProt P93026 · UniProt P15455
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