Research workbench
Structural and functional characterization of bovine G1P[5] rotavirus VP8* protein
Analyse Structural and functional characterization of bovine G1P[5] rotavirus VP8*… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7F0H
- Type
- protein
- Length
- 322 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer capsid protein VP8*
- UniProt
- E2EA93
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Outer capsid protein VP8* | protein | 161 | 10% helix, 55% strand | E2EA93 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 443 | 0.70 | 0.81 | 56 | empty |
Interfaces
1 interface between chains.
- A–B · 1118 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 7F0H · Structural and functional characterization of bovine G1P[5] rotavirus VP8* protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E2EA93
- Elsewhere: RCSB PDB 7F0H · PDBe 7F0H · UniProt E2EA93
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