Research workbench
Crystal structure of ENPKS1
Analyse Crystal structure of ENPKS1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7F0G
- Type
- protein
- Length
- 3,052 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ENPKS1
- Ligands
- SO4
- Pockets
- 20 · best druggability 0.83
Structure
x-ray diffraction · 5 distinct chains · 41% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ENPKS1 | protein | 376 | 41% helix, 24% strand | — |
| B, D | ENPKS1 | protein | 391 | 40% helix, 24% strand | — |
| C | ENPKS1 | protein | 380 | 41% helix, 23% strand | — |
| E, F | ENPKS1 | protein | 378 | 41% helix, 24% strand | — |
| G, H | ENPKS1 | protein | 379 | 41% helix, 24% strand | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 14 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 486 | 0.83 | 0.89 | 73 | empty |
| 2 | 1179 | 0.82 | 0.83 | 117 | empty |
| 3 | 493 | 0.80 | 0.87 | 62 | empty |
| 4 | 530 | 0.79 | 0.86 | 65 | empty |
| 5 | 596 | 0.76 | 0.82 | 58 | empty |
Interfaces
11 interfaces between chains.
- B–D · 3304 Ų buried · 53 hydrogen bonds · protein-protein
- E–G · 2535 Ų buried · 53 hydrogen bonds · protein-protein
- A–H · 2530 Ų buried · 47 hydrogen bonds · protein-protein
- A–B · 1071 Ų buried · 16 hydrogen bonds · protein-protein
- E–F · 658 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 7F0G · Crystal Structure of EnPKS1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7F0G · PDBe 7F0G
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