Research workbench
Apo L-21 scai tetrahymena ribozyme
Analyse Apo L-21 scai tetrahymena ribozyme in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7EZ0
- Type
- RNA
- Length
- 387 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Apo L-21 scai tetrahymena ribozyme
- Ligands
- MG
- Pockets
- 18 · best druggability 0.73
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| N | Apo L-21 scai tetrahymena ribozyme | rna | 387 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 27 copies · chains N
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
18 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 183 | 0.73 | 0.91 | 21 | MG |
| 2 | 790 | 0.66 | 0.75 | 35 | MG |
| 3 | 779 | 0.65 | 0.74 | 36 | MG |
| 4 | 489 | 0.63 | 0.77 | 33 | MG |
| 5 | 570 | 0.60 | 0.74 | 28 | empty |
Compared structures
- 7EZ0 · Apo L-21 ScaI Tetrahymena ribozyme · the same entry in another collection · chain N against N, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7EZ0 · PDBe 7EZ0
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