Research workbench

PORTAL

Analyse PORTAL in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7EY8
Type: protein
Length: 6,300 residues
Chains: 12
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Portal protein
UniProt: P03728
Pockets: 20 · best druggability 0.83

Structure

electron microscopy · 1 distinct chain · 48% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J, K, L	Portal protein	protein	525	48% helix, 11% strand	P03728

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	873	0.83	0.85	72	empty
2	828	0.82	0.85	70	empty
3	1031	0.82	0.83	79	empty
4	1028	0.82	0.83	76	empty
5	594	0.82	0.87	47	empty

Interfaces

24 interfaces between chains.

K–L · 5973 Å² buried · 61 hydrogen bonds · protein-protein
E–F · 5970 Å² buried · 64 hydrogen bonds · protein-protein
J–K · 5964 Å² buried · 66 hydrogen bonds · protein-protein
A–L · 5964 Å² buried · 58 hydrogen bonds · protein-protein
A–B · 5963 Å² buried · 61 hydrogen bonds · protein-protein

Compared structures

7EY8 · portal · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03728
Elsewhere: RCSB PDB 7EY8 · PDBe 7EY8 · UniProt P03728

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