Research workbench
Bacteriophage T7 tail complex
Analyse Bacteriophage T7 tail complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7EY7
- Type
- protein
- Length
- 9,744 residues
- Chains
- 42
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tail fiber protein; Tail tubular protein GP12; Internal virion protein GP14; Tail tubular…
- UniProt
- P03748, P03747, P03724, P03746
- Pockets
- 20 · best druggability 0.84
Structure
electron microscopy · 5 distinct chains · 23% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r | Tail fiber protein | protein | 115 | 21% helix, 23% strand | P03748 |
| s, t, u, v, w, x | Tail tubular protein GP12 | protein | 789 | 5% helix, 34% strand | P03747 |
| A, B, C, D, E, F | Internal virion protein GP14 | protein | 102 | 94% helix, 0% strand | P03724 |
| M, O, Q, S, U, W | Tail tubular protein GP11 | protein | 195 | 42% helix, 13% strand | P03746 |
| N, P, R, T, V, X | Tail tubular protein GP11 | protein | 193 | 42% helix, 13% strand | P03746 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1140 | 0.84 | 0.85 | 121 | empty |
| 2 | 882 | 0.83 | 0.85 | 83 | empty |
| 3 | 1043 | 0.83 | 0.84 | 99 | empty |
| 4 | 815 | 0.82 | 0.85 | 72 | empty |
| 5 | 842 | 0.82 | 0.85 | 79 | empty |
Interfaces
126 interfaces between chains.
- U–V · 1843 Ų buried · 15 hydrogen bonds · protein-protein
- S–T · 1831 Ų buried · 18 hydrogen bonds · protein-protein
- W–X · 1830 Ų buried · 17 hydrogen bonds · protein-protein
- Q–R · 1830 Ų buried · 17 hydrogen bonds · protein-protein
- O–P · 1817 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 7EY7 · bacteriophage T7 tail complex · the same entry in another collection · chain a against a, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03748
- Every structure of UniProt P03747
- Every structure of UniProt P03724
- Every structure of UniProt P03746
- Elsewhere: RCSB PDB 7EY7 · PDBe 7EY7 · UniProt P03748 · UniProt P03747 · UniProt P03724 · UniProt P03746
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.