Research workbench

The portal protein (GP8) of bacteriophage T7

Analyse The portal protein (GP8) of bacteriophage T7 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7EY6
Type: protein
Length: 5,628 residues
Chains: 12
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Portal protein
UniProt: P03728
Pockets: 20 · best druggability 0.87

Structure

electron microscopy · 1 distinct chain · 46% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J, K, L	Portal protein	protein	469	46% helix, 11% strand	P03728

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	799	0.87	0.90	112	empty
2	949	0.86	0.87	87	empty
3	1037	0.85	0.86	84	empty
4	1120	0.85	0.86	97	empty
5	1143	0.85	0.86	107	empty

Interfaces

24 interfaces between chains.

D–E · 4974 Å² buried · 50 hydrogen bonds · protein-protein
J–K · 4966 Å² buried · 49 hydrogen bonds · protein-protein
A–L · 4958 Å² buried · 48 hydrogen bonds · protein-protein
F–G · 4949 Å² buried · 48 hydrogen bonds · protein-protein
H–I · 4943 Å² buried · 49 hydrogen bonds · protein-protein

Compared structures

7EY6 · The portal protein (GP8) of bacteriophage T7 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03728
Elsewhere: RCSB PDB 7EY6 · PDBe 7EY6 · UniProt P03728

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.