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Structure of mumps virus nucleocapsid ring
Analyse Structure of mumps virus nucleocapsid ring in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7EWQ
- Type
- protein + RNA
- Length
- 380 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoprotein; RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')
- UniProt
- Q77IS8
- Pockets
- 4 · best druggability 0.57
Structure
electron microscopy · 2 distinct chains · 60% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoprotein | protein | 374 | 60% helix, 5% strand | Q77IS8 |
| B | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | rna | 6 | — | — |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.57 | 0.82 | 25 | empty |
| 2 | 249 | 0.50 | 0.75 | 28 | empty |
| 3 | 82 | 0.40 | 0.78 | 20 | empty |
| 4 | 87 | 0.35 | 0.75 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 799 Ų buried · 20 hydrogen bonds · protein-nucleic
Compared structures
- 7EWQ · Structure of Mumps virus nucleocapsid ring · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q77IS8
- Elsewhere: RCSB PDB 7EWQ · PDBe 7EWQ · UniProt Q77IS8
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