Research workbench
Crystal structure of E. COLI valine tRNA
Analyse Crystal structure of E. COLI valine tRNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7EQJ
- Type
- RNA
- Length
- 151 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (76-mer)
- Ligands
- MG, NA
- Pockets
- 3 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (76-mer) | rna | 76 | — | — |
| B | RNA (76-mer) | rna | 75 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 899 | 0.71 | 0.77 | 49 | NA, MG |
| 2 | 680 | 0.64 | 0.75 | 33 | MG |
| 3 | 572 | 0.62 | 0.75 | 32 | MG |
Interfaces
1 interface between chains.
- A–B · 130 Ų buried · 4 hydrogen bonds · nucleic-nucleic
Compared structures
- 7EQJ · crystal structure of E. coli Valine tRNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7EQJ · PDBe 7EQJ
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