Research workbench
Plant growth-promoting factor yxal mutant from bacillus velezensis - T175W/W215G
Analyse Plant growth-promoting factor yxal mutant from bacillus velezensis - T175W/W215G in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7EQ5
- Type
- protein
- Length
- 739 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Membrane associated protein kinase with beta-propeller domain, pyrrolo-quinoline quinone…
- Pockets
- 5 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 1% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Membrane associated protein kinase with beta-propeller domain, pyrrolo-quinoline quinone beta-propeller repeat | protein | 371 | 1% helix, 46% strand | — |
| B | Membrane associated protein kinase with beta-propeller domain, pyrrolo-quinoline quinone beta-propeller repeat | protein | 368 | 2% helix, 47% strand | — |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 415 | 0.60 | 0.76 | 35 | empty |
| 2 | 108 | 0.41 | 0.77 | 23 | empty |
| 3 | 119 | 0.40 | 0.75 | 18 | empty |
| 4 | 78 | 0.38 | 0.77 | 17 | empty |
| 5 | 74 | 0.30 | 0.73 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 571 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 7EQ5 · Plant growth-promoting factor YxaL mutant from Bacillus velezensis - T175W/W215G · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7EQ5 · PDBe 7EQ5
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