Research workbench

Ketosteroid isomerase ksi with 5-nitrobenzoxazole (5NBI)

Analyse Ketosteroid isomerase ksi with 5-nitrobenzoxazole (5NBI) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7EPO
Type: protein
Length: 130 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Snoal-like domain-containing protein
UniProt: I7FVV8
Ligands: H5J
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Snoal-like domain-containing protein	protein	130	32% helix, 41% strand	I7FVV8

Ligands and binding sites

H5J · 5-nitro-1,2-benzoxazole · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	308	0.72	0.85	33	H5J

Compared structures

7EPO · Ketosteroid Isomerase KSI with 5-nitrobenzoxazole (5NBI) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt I7FVV8
Elsewhere: RCSB PDB 7EPO · PDBe 7EPO · UniProt I7FVV8

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