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Engineered hepatitis B virus core antigen T=3

Analyse Engineered hepatitis B virus core antigen T=3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7EOY
Type: protein
Length: 423 residues
Chains: 3
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsid PROTEIN,IMMUNOGLOBULIN G-binding protein a
UniProt: P69706
Pockets: 5 · best druggability 0.72

Structure

electron microscopy · 1 distinct chain · 67% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, C, A	Capsid PROTEIN,IMMUNOGLOBULIN G-binding protein a	protein	141	67% helix, 0% strand	P69706

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	411	0.72	0.83	46	empty
2	137	0.70	0.89	28	empty
3	122	0.70	0.91	27	empty
4	55	0.28	0.74	14	empty
5	52	0.27	0.74	15	empty

Interfaces

2 interfaces between chains.

B–A · 1931 Å² buried · 3 hydrogen bonds · protein-protein
B–C · 649 Å² buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

7EOY · Engineered Hepatitis B virus core antigen T=3 · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P69706
Elsewhere: RCSB PDB 7EOY · PDBe 7EOY · UniProt P69706

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